STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4162TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: bha:BH3748 stage II sporulation protein D. (317 aa)    
Predicted Functional Partners:
Dtox_2111
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.870
Dtox_4161
PFAM: Peptidase M23; KEGG: vpa:VPA1649 putative TagE protein.
 
   
 0.794
Dtox_3229
TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein; KEGG: bsu:BSU25530 required for dissolution of the septal cell wall (stage II sporulation).
  
  
 0.774
Dtox_4159
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: bha:BH3740 transcriptional regulator of sigma- E- and sigma-K-dependent.
 
   
 0.756
Dtox_1068
TIGRFAM: stage II sporulation protein R; KEGG: bsu:BSU36970 required for processing of pro- sigma-E.
  
   
 0.736
Dtox_2611
TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: bha:BH2797 mutants block sporulation after engulfment.
  
  
 0.721
spoIIAB
Anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.680
Dtox_2469
KEGG: baa:BA_0374 hypothetical protein.
 
   
 0.668
Dtox_3071
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: bha:BH1360 stage IV sporulation protein.
  
  
 0.637
Dtox_0227
KEGG: bar:GBAA0061 stage II sporulation protein E; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
 
   
 0.626
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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