STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4196PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: bpy:Bphyt_0187 response regulator receiver modulated metal dependent phosphohydrolase. (350 aa)    
Predicted Functional Partners:
Dtox_0726
Diguanylate cyclase; KEGG: dat:HRM2_39450 GGDEF domain family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein.
 
    0.974
Dtox_2183
KEGG: bac:BamMC406_1290 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; GAF domain protein; SMART: GGDEF domain-containing protein; GAF domain protein.
  
 0.965
Dtox_2527
Diguanylate cyclase; KEGG: nis:NIS_0636 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein.
 
    0.953
Dtox_2725
Diguanylate cyclase; KEGG: baa:BA_0523 DUF1, domain of unknown Function with GGDEF motif; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; SMART: GGDEF domain-containing protein.
 
    0.940
Dtox_0047
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain-containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein.
 
 0.931
Dtox_3787
Response regulator receiver modulated diguanylate cyclase; KEGG: noc:Noc_0847 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; response regulator receiver; SMART: GGDEF domain-containing protein; response regulator receiver.
  
0.929
Dtox_1677
Diguanylate cyclase with PAS/PAC sensor; KEGG: shw:Sputw3181_0672 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain-containing protein; PAS fold domain protein; SMART: GGDEF domain-containing protein; PAS domain-containing protein.
 
    0.921
Dtox_1676
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein.
 
 0.888
Dtox_0616
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein.
 
 0.885
Dtox_0767
KEGG: tgr:Tgr7_1990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain-containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein.
 
 0.882
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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