STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4241KEGG: bsu:BSU12650 hypothetical protein. (482 aa)    
Predicted Functional Partners:
Dtox_4249
KEGG: bsu:BSU12720 hypothetical protein.
 
 
 0.998
Dtox_4251
KEGG: bsu:BSU12740 hypothetical protein.
 
 
 0.996
Dtox_4250
PFAM: Baseplate J family protein; KEGG: bsu:BSU25980 hypothetical protein.
 
 
 0.991
Dtox_4246
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein.
 
 
 0.983
Dtox_4242
KEGG: bsu:BSU12660 hypothetical protein.
 
   
 0.959
Dtox_4245
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bar:GBAA4082 prophage LambdaBa02, tape measure protein, putative.
 
  
 0.901
Dtox_4230
KEGG: vvu:VV1_0114 hypothetical protein.
 
     0.858
Dtox_4243
PFAM: XkdN-like protein; KEGG: hypothetical protein.
  
    0.839
Dtox_4240
Hypothetical protein.
       0.822
Dtox_4239
Hypothetical protein.
       0.817
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.