STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4262TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: cff:CFF8240_0990 type I restriction- modification system, M subunit. (527 aa)    
Predicted Functional Partners:
Dtox_2621
PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1216 restriction modification system DNA specificity subunit.
 
 0.988
Dtox_4260
Hypothetical protein; KEGG: sbm:Shew185_4455 restriction modification system DNA specificity subunit.
 
 
 0.981
Dtox_4202
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
 0.980
Dtox_4263
Hypothetical protein; KEGG: cff:CFF8240_0991 restriction modification system DNA specificity subunit.
  
 
 0.963
Dtox_2173
Hypothetical protein; KEGG: wsu:WS1649 DNA methylase-type I restriction- modification system.
  
 
 0.817
Dtox_4261
Hypothetical protein.
       0.773
Dtox_2620
Hypothetical protein.
 
   
 0.732
Dtox_4201
PFAM: protein of unknown function DUF45; KEGG: tdn:Suden_0949 hypothetical protein.
 
     0.719
Dtox_0998
KEGG: mmw:Mmwyl1_4371 hypothetical protein.
 
    0.657
Dtox_4264
SMART: HNH nuclease; KEGG: rde:RD1_A0048 OSJNBa0044K18.12.
     
 0.463
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.