STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtox_4317PFAM: zinc finger SWIM domain protein; KEGG: bsu:BSU36270 hypothetical protein. (600 aa)    
Predicted Functional Partners:
Dtox_4316
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bsu:BSU36280 hypothetical protein.
 
    0.873
Dtox_4315
Hypothetical protein.
       0.661
Dtox_3139
PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2628 permease, putative.
  
     0.609
Dtox_0810
PFAM: tryptophan RNA-binding attenuator protein; KEGG: bsu:BSU22770 transcription attenuation protein MtrB.
  
     0.442
Dtox_0089
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
    0.419
Dtox_2383
PFAM: protein of unknown function DUF1657; KEGG: baa:BA_0236 hypothetical protein.
  
     0.405
Your Current Organism:
Desulfofarcimen acetoxidans
NCBI taxonomy Id: 485916
Other names: D. acetoxidans DSM 771, Desulfofarcimen acetoxidans DSM 771, Desulfotomaculum acetoxidans DSM 771
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.