STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_0315PFAM: Uncharacterized protein conserved in bacteria (DUF2086). (142 aa)    
Predicted Functional Partners:
Phep_0316
Conserved hypothetical protein; PFAM: Protein of unknown function (DUF1349).
       0.686
Phep_0314
methylated-DNA/protein-cysteine methyltransferase; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.
       0.648
Phep_0317
Protein of unknown function DUF1486; PFAM: SnoaL-like polyketide cyclase.
 
     0.632
Phep_3466
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.478
Phep_0318
HhH-GPD family protein; PFAM: 8-oxoguanine DNA glycosylase, N-terminal domain; HhH-GPD superfamily base excision DNA repair protein.
 
     0.463
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.