Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Phep_0168 | Phep_0368 | Conserved hypothetical protein. | Hypothetical protein. | 0.500 |
Phep_0168 | Phep_0465 | Conserved hypothetical protein. | Hypothetical protein. | 0.464 |
Phep_0368 | Phep_0168 | Hypothetical protein. | Conserved hypothetical protein. | 0.500 |
Phep_0368 | Phep_0465 | Hypothetical protein. | Hypothetical protein. | 0.416 |
Phep_0463 | Phep_0464 | PFAM: Iron dependent repressor, metal binding and dimerisation domain; FeoA domain; Iron dependent repressor, N-terminal DNA binding domain. | PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. | 0.603 |
Phep_0463 | Phep_0465 | PFAM: Iron dependent repressor, metal binding and dimerisation domain; FeoA domain; Iron dependent repressor, N-terminal DNA binding domain. | Hypothetical protein. | 0.517 |
Phep_0464 | Phep_0463 | PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. | PFAM: Iron dependent repressor, metal binding and dimerisation domain; FeoA domain; Iron dependent repressor, N-terminal DNA binding domain. | 0.603 |
Phep_0464 | Phep_0465 | PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. | Hypothetical protein. | 0.782 |
Phep_0465 | Phep_0168 | Hypothetical protein. | Conserved hypothetical protein. | 0.464 |
Phep_0465 | Phep_0368 | Hypothetical protein. | Hypothetical protein. | 0.416 |
Phep_0465 | Phep_0463 | Hypothetical protein. | PFAM: Iron dependent repressor, metal binding and dimerisation domain; FeoA domain; Iron dependent repressor, N-terminal DNA binding domain. | 0.517 |
Phep_0465 | Phep_0464 | Hypothetical protein. | PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. | 0.782 |
Phep_0465 | Phep_0766 | Hypothetical protein. | PFAM: DinB family. | 0.425 |
Phep_0465 | Phep_2331 | Hypothetical protein. | PFAM: Activator of Hsp90 ATPase homolog 1-like protein. | 0.430 |
Phep_0465 | Phep_2477 | Hypothetical protein. | PFAM: Surface antigen. | 0.471 |
Phep_0465 | Phep_3148 | Hypothetical protein. | Hypothetical protein. | 0.412 |
Phep_0465 | Phep_3853 | Hypothetical protein. | Hypothetical protein. | 0.434 |
Phep_0766 | Phep_0465 | PFAM: DinB family. | Hypothetical protein. | 0.425 |
Phep_2331 | Phep_0465 | PFAM: Activator of Hsp90 ATPase homolog 1-like protein. | Hypothetical protein. | 0.430 |
Phep_2477 | Phep_0465 | PFAM: Surface antigen. | Hypothetical protein. | 0.471 |
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