node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Phep_0497 | Phep_0498 | Phep_0497 | Phep_0498 | 3-carboxymuconate cyclase-like protein; PFAM: Domain of unknown function (DUF2394). | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | 0.858 |
Phep_0498 | Phep_0497 | Phep_0498 | Phep_0497 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | 3-carboxymuconate cyclase-like protein; PFAM: Domain of unknown function (DUF2394). | 0.858 |
Phep_0498 | Phep_0877 | Phep_0498 | Phep_0877 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | 0.635 |
Phep_0498 | Phep_2061 | Phep_0498 | Phep_2061 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.450 |
Phep_0498 | Phep_4271 | Phep_0498 | Phep_4271 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | 0.635 |
Phep_0498 | cmk | Phep_0498 | Phep_1190 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | PFAM: Cytidylate kinase; Shikimate kinase; TIGRFAM: cytidylate kinase. | 0.751 |
Phep_0498 | der | Phep_0498 | Phep_3778 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.894 |
Phep_0498 | era | Phep_0498 | Phep_3777 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.575 |
Phep_0498 | pheT | Phep_0498 | Phep_0825 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. | 0.424 |
Phep_0498 | rplU | Phep_0498 | Phep_1624 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.500 |
Phep_0498 | truB | Phep_0498 | Phep_3547 | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.446 |
Phep_0877 | Phep_0498 | Phep_0877 | Phep_0498 | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | 0.635 |
Phep_0877 | Phep_4271 | Phep_0877 | Phep_4271 | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | 0.924 |
Phep_2061 | Phep_0498 | Phep_2061 | Phep_0498 | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | 0.450 |
Phep_2061 | der | Phep_2061 | Phep_3778 | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.602 |
Phep_2061 | era | Phep_2061 | Phep_3777 | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.591 |
Phep_2061 | pheT | Phep_2061 | Phep_0825 | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. | 0.417 |
Phep_2061 | rplU | Phep_2061 | Phep_1624 | RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.694 |
Phep_4271 | Phep_0498 | Phep_4271 | Phep_0498 | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | 0.635 |
Phep_4271 | Phep_0877 | Phep_4271 | Phep_0877 | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | Exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III. | 0.924 |