Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Phep_0973 | Phep_0974 | Phep_0973 | Phep_0974 | PFAM: Amino acid permease. | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | 0.851 |
Phep_0973 | Phep_0975 | Phep_0973 | Phep_0975 | PFAM: Amino acid permease. | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | 0.853 |
Phep_0973 | Phep_0978 | Phep_0973 | Phep_0978 | PFAM: Amino acid permease. | Hypothetical protein. | 0.567 |
Phep_0973 | Phep_1263 | Phep_0973 | Phep_1263 | PFAM: Amino acid permease. | PFAM: Alpha amylase, catalytic domain. | 0.864 |
Phep_0973 | Phep_1622 | Phep_0973 | Phep_1622 | PFAM: Amino acid permease. | PFAM: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.501 |
Phep_0973 | Phep_2904 | Phep_0973 | Phep_2904 | PFAM: Amino acid permease. | PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial. | 0.454 |
Phep_0973 | engB | Phep_0973 | Phep_0976 | PFAM: Amino acid permease. | GTP-binding protein HSR1-related; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.851 |
Phep_0973 | menG | Phep_0973 | Phep_0977 | PFAM: Amino acid permease. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.604 |
Phep_0974 | Phep_0973 | Phep_0974 | Phep_0973 | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | PFAM: Amino acid permease. | 0.851 |
Phep_0974 | Phep_0975 | Phep_0974 | Phep_0975 | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | 0.858 |
Phep_0974 | Phep_0978 | Phep_0974 | Phep_0978 | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | Hypothetical protein. | 0.578 |
Phep_0974 | engB | Phep_0974 | Phep_0976 | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | GTP-binding protein HSR1-related; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.798 |
Phep_0974 | menG | Phep_0974 | Phep_0977 | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.689 |
Phep_0975 | Phep_0973 | Phep_0975 | Phep_0973 | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | PFAM: Amino acid permease. | 0.853 |
Phep_0975 | Phep_0974 | Phep_0975 | Phep_0974 | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | 0.858 |
Phep_0975 | Phep_0978 | Phep_0975 | Phep_0978 | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | Hypothetical protein. | 0.584 |
Phep_0975 | engB | Phep_0975 | Phep_0976 | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | GTP-binding protein HSR1-related; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.839 |
Phep_0975 | menG | Phep_0975 | Phep_0977 | PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.772 |
Phep_0978 | Phep_0973 | Phep_0978 | Phep_0973 | Hypothetical protein. | PFAM: Amino acid permease. | 0.567 |
Phep_0978 | Phep_0974 | Phep_0978 | Phep_0974 | Hypothetical protein. | PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family. | 0.578 |
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