STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_1536PFAM: Glycosyl transferases group 1. (380 aa)    
Predicted Functional Partners:
Phep_1535
LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase.
 
  
 0.956
Phep_1537
Hypothetical protein.
 
   0.954
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.532
Phep_3905
PFAM: Glycosyl transferases group 1.
  
     0.524
Phep_3903
Hypothetical protein.
  
     0.501
Phep_2034
Amino acid adenylation domain protein; PFAM: Aminotransferase class-III; AMP-binding enzyme; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; TIGRFAM: amino acid adenylation domain.
 
 
 0.495
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.491
Phep_1600
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
     0.480
Phep_1455
PFAM: Glycosyl transferases group 1.
  
     0.460
Phep_2033
Amino acid adenylation domain protein; PFAM: Condensation domain; AMP-binding enzyme; Methyltransferase domain; TIGRFAM: amino acid adenylation domain.
   
 
 0.446
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.