STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_1627PFAM: Response regulator receiver domain. (320 aa)    
Predicted Functional Partners:
Phep_1626
Helix-turn-helix domain protein; PFAM: Helix-turn-helix.
       0.488
Phep_0587
ATP-binding region ATPase domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; CHASE3 domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.
 
   
 0.468
Phep_1716
PAS sensor protein; PFAM: PAS fold; PAS fold; TIGRFAM: PAS domain S-box.
 
   
 0.463
Phep_3858
PAS sensor protein; PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; TIGRFAM: PAS domain S-box.
 
   
 0.463
Phep_3911
PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
   
 0.463
Phep_1950
PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; Response regulator receiver domain; GAF domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; PAS domain S-box.
 
   
 0.447
Phep_2336
PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box.
 
     0.422
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.