STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_1841PFAM: LytTr DNA-binding domain; Response regulator receiver domain. (245 aa)    
Predicted Functional Partners:
Phep_1842
PFAM: Histidine kinase.
 
 
 0.974
Phep_1584
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Histidine kinase.
 
  
 0.836
Phep_0216
PFAM: Histidine kinase.
 
 
 0.830
Phep_2254
PFAM: Histidine kinase.
 
 
 0.828
Phep_3061
PFAM: Histidine kinase.
 
 
 0.828
Phep_1541
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.826
Phep_3160
PFAM: Histidine kinase.
 
 
 0.826
Phep_3125
PFAM: Histidine kinase.
 
 
 0.824
Phep_3413
PFAM: Tetratricopeptide repeat; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.824
Phep_2440
PFAM: Histidine kinase.
 
 
 0.823
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.