Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Phep_1953 | Phep_1954 | PFAM: Bacterial sugar transferase. | Hypothetical protein. | 0.670 |
Phep_1953 | Phep_1955 | PFAM: Bacterial sugar transferase. | Hypothetical protein. | 0.474 |
Phep_1953 | Phep_1958 | PFAM: Bacterial sugar transferase. | Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein. | 0.852 |
Phep_1953 | Phep_1959 | PFAM: Bacterial sugar transferase. | Hypothetical protein. | 0.798 |
Phep_1953 | Phep_1964 | PFAM: Bacterial sugar transferase. | Glycosyltransferase probably involved in cell wall biogenesis. | 0.413 |
Phep_1954 | Phep_1953 | Hypothetical protein. | PFAM: Bacterial sugar transferase. | 0.670 |
Phep_1954 | Phep_1955 | Hypothetical protein. | Hypothetical protein. | 0.661 |
Phep_1954 | Phep_1957 | Hypothetical protein. | Outer membrane protein. | 0.767 |
Phep_1954 | Phep_1958 | Hypothetical protein. | Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein. | 0.802 |
Phep_1954 | Phep_1959 | Hypothetical protein. | Hypothetical protein. | 0.700 |
Phep_1954 | Phep_1962 | Hypothetical protein. | PFAM: Glycosyl transferase family 2. | 0.759 |
Phep_1954 | Phep_1964 | Hypothetical protein. | Glycosyltransferase probably involved in cell wall biogenesis. | 0.758 |
Phep_1954 | Phep_1965 | Hypothetical protein. | PFAM: Glycosyl transferase family 2. | 0.737 |
Phep_1954 | Phep_1969 | Hypothetical protein. | PFAM: Glycosyl transferase family 2. | 0.756 |
Phep_1954 | Phep_3496 | Hypothetical protein. | RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins. | 0.634 |
Phep_1955 | Phep_1953 | Hypothetical protein. | PFAM: Bacterial sugar transferase. | 0.474 |
Phep_1955 | Phep_1954 | Hypothetical protein. | Hypothetical protein. | 0.661 |
Phep_1957 | Phep_1954 | Outer membrane protein. | Hypothetical protein. | 0.767 |
Phep_1957 | Phep_1958 | Outer membrane protein. | Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein. | 0.958 |
Phep_1957 | Phep_1959 | Outer membrane protein. | Hypothetical protein. | 0.865 |
page 1 of 4