STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_1966Twin-arginine translocation pathway signal. (191 aa)    
Predicted Functional Partners:
Phep_1967
Conserved hypothetical protein; PFAM: FAD dependent oxidoreductase.
 
 
 0.964
Phep_2474
PFAM: GMC oxidoreductase; FAD dependent oxidoreductase.
 
 
 0.812
Phep_3645
PFAM: FAD dependent oxidoreductase; GMC oxidoreductase.
 
 
 0.812
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.782
Phep_2609
PFAM: FAD binding domain; GMC oxidoreductase.
 
 
 0.761
Phep_1965
PFAM: Glycosyl transferase family 2.
  
    0.571
Phep_3652
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.553
Phep_1977
2-keto-gluconate dehydrogenase subunit.
 
 
 0.534
Phep_2608
Hypothetical protein.
  
     0.517
Phep_3653
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.484
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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