STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2136PFAM: DSBA-like thioredoxin domain. (213 aa)    
Predicted Functional Partners:
Phep_2135
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.858
Phep_0590
Arsenate reductase and related; PFAM: ArsC family; TIGRFAM: conserved hypothetical protein; Belongs to the ArsC family.
   
 
 0.785
Phep_2137
PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
       0.645
Phep_1838
Globin; PFAM: Bacterial-like globin.
  
  
 0.566
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
       0.566
Phep_2133
tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase family.
       0.549
Phep_2138
PFAM: FecR protein.
       0.464
Phep_0421
PFAM: NADPH-dependent FMN reductase.
 
    0.458
Phep_0947
NAD(P)H dehydrogenase (quinone); PFAM: NADPH-dependent FMN reductase.
 
    0.453
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
   0.427
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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