STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2208PFAM: Cytochrome c; PKD domain. (908 aa)    
Predicted Functional Partners:
Phep_0731
Crp/FNR family transcriptional regulator.
     0.958
Phep_1693
PFAM: Cytochrome c.
  
 
0.919
Phep_3648
PFAM: Cytochrome c.
 
  
 
0.911
Phep_2205
PFAM: Cytochrome c.
 
     0.752
Phep_0427
Conserved hypothetical protein.
 
     0.751
Phep_2206
PFAM: Domain of Unknown Function (DUF1080).
 
     0.740
Phep_0430
TatD-related deoxyribonuclease; PFAM: TatD related DNase.
 
     0.729
Phep_0429
PFAM: UbiA prenyltransferase family.
 
    0.724
Phep_0426
PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.714
Phep_0431
Hypothetical protein.
  
     0.678
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.