STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2354Hypothetical protein. (173 aa)    
Predicted Functional Partners:
Phep_3593
Hypothetical protein.
  
     0.627
Phep_3488
Hypothetical protein.
  
 
   0.571
Phep_2351
Hypothetical protein.
   
   0.538
Phep_1709
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
  
 
   0.536
Phep_2352
PFAM: TonB-dependent Receptor Plug Domain.
       0.526
Phep_2353
Redoxin domain protein; PFAM: Redoxin.
       0.526
Phep_2709
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
  
 
   0.520
Phep_0329
Hypothetical protein.
  
 
   0.517
Phep_2591
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
   0.515
Phep_2242
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
  
 
   0.508
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.