STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2479Hypothetical protein. (293 aa)    
Predicted Functional Partners:
Phep_2481
Conserved hypothetical protein.
 
     0.951
Phep_2477
PFAM: Surface antigen.
 
     0.902
Phep_2478
Hypothetical protein.
 
     0.878
Phep_2480
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).
       0.858
Phep_1687
Hypothetical protein.
 
     0.781
Phep_3671
Hypothetical protein.
  
     0.551
Phep_2482
PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC.
       0.550
Phep_2483
PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type.
       0.550
Phep_3471
PFAM: Family of unknown function (DUF490); AsmA family.
  
     0.518
Phep_2484
PFAM: Cytochrome C and Quinol oxidase polypeptide I; Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
       0.490
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.