STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2516PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (772 aa)    
Predicted Functional Partners:
Phep_2515
Hypothetical protein.
 
  
 0.959
Phep_2514
PFAM: PepSY-associated TM helix.
    0.812
Phep_1146
Hypothetical protein.
 
   
 0.709
Phep_2517
Helix-turn-helix- domain containing protein AraC type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.534
Phep_3385
Hypothetical protein.
  
 
   0.464
Phep_3488
Hypothetical protein.
  
 
   0.417
Phep_4105
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
  
 
   0.404
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.