STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2692Conserved hypothetical protein. (503 aa)    
Predicted Functional Partners:
Phep_2700
Beta-galactosidase; PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
 
     0.662
cslB
Hypothetical protein; Cleaves the glycosaminoglycan, dermatan sulfate.
 
    0.581
Phep_2943
Hypothetical protein.
 
     0.539
Phep_2693
PFAM: Alpha-L-fucosidase.
 
     0.535
Phep_2696
Hypothetical protein.
 
     0.512
Phep_2691
TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
    0.500
Phep_2690
Hypothetical protein.
       0.497
Phep_2697
PFAM: Glycosyl hydrolases family 31; Belongs to the glycosyl hydrolase 31 family.
 
     0.451
Phep_2695
PFAM: Alpha-L-fucosidase.
 
     0.415
Phep_1958
Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein.
 
   
 0.405
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.