STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_2915PFAM: LysM domain. (393 aa)    
Predicted Functional Partners:
Phep_2916
PFAM: Phosphoribulokinase / Uridine kinase family.
 
     0.875
Phep_2914
Ferritin Dps family protein; PFAM: Ferritin-like domain; Belongs to the Dps family.
       0.544
Phep_0154
OmpA/MotB domain protein; PFAM: Thrombospondin type 3 repeat; OmpA family.
 
 
 
 0.487
Phep_2066
OmpA/MotB domain protein; PFAM: Tetratricopeptide repeat; WD40-like Beta Propeller Repeat; OmpA family.
 
 
 
 0.483
Phep_1935
Hypothetical protein.
 
 
 
 0.461
Phep_3730
OmpA/MotB domain protein; PFAM: Thrombospondin type 3 repeat; OmpA family.
 
 
 
 0.459
Phep_1944
OmpA/MotB domain protein; PFAM: OmpA family.
 
 
 
 0.455
Phep_2086
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; Pentapeptide repeats (8 copies).
   
 
 0.416
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.