STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3141TIGRFAM: conserved hypothetical protein (putative transposase or invertase). (275 aa)    
Predicted Functional Partners:
Phep_3140
PFAM: Xylose isomerase-like TIM barrel.
 
    0.778
Phep_1969
PFAM: Glycosyl transferase family 2.
  
     0.753
Phep_1962
PFAM: Glycosyl transferase family 2.
  
     0.751
Phep_1957
Outer membrane protein.
  
     0.646
Phep_0885
TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
 
     0.603
Phep_1763
TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
 
     0.599
Phep_1070
TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
 
     0.595
Phep_1958
Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein.
  
     0.586
Phep_1737
TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
 
     0.581
Phep_0886
Transposase and inactivated derivative; TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
 
     0.574
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.