STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3270Allergen V5/TPX-1 family protein. (228 aa)    
Predicted Functional Partners:
Phep_3272
Hypothetical protein.
 
     0.756
Phep_3269
Hypothetical protein.
       0.590
Phep_3271
PFAM: Sulfatase.
       0.565
Phep_3274
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.485
Phep_3273
PFAM: Biopterin-dependent aromatic amino acid hydroxylase.
       0.482
Phep_0942
PFAM: Glycosyl hydrolases family 2, sugar binding domain.
  
    0.452
Phep_1039
PFAM: Fibronectin type III domain.
  
    0.452
Phep_1578
PFAM: Glycosyl hydrolases family 2, sugar binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
    0.452
Phep_2104
Hypothetical protein.
  
    0.452
Phep_2304
PFAM: Glycosyl hydrolases family 2, sugar binding domain.
  
    0.452
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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