STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3348Hypothetical protein. (187 aa)    
Predicted Functional Partners:
Phep_3349
PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family.
       0.556
Phep_3669
PFAM: Protein of unknown function (DUF1094); Belongs to the UPF0403 family.
 
    0.484
Phep_2928
Peroxidase; PFAM: AhpC/TSA family; C-terminal domain of 1-Cys peroxiredoxin.
  
 0.466
Phep_4266
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family.
  
 0.466
Phep_2512
Electron transport protein SCO1/SenC; PFAM: SCO1/SenC.
 
 
 0.452
Phep_3154
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.449
Phep_2495
Electron transport protein SCO1/SenC; PFAM: SCO1/SenC.
 
 
 0.445
Phep_3200
PFAM: TonB-dependent Receptor Plug Domain.
  
  
  0.440
Phep_0301
Electron transport protein SCO1/SenC; PFAM: SCO1/SenC.
 
 
 0.438
Phep_2288
Conserved hypothetical protein.
   
 0.432
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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