STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3354PFAM: ABC transporter. (275 aa)    
Predicted Functional Partners:
Phep_3352
PFAM: Bacterial regulatory proteins, gntR family.
 
  
 0.965
Phep_3353
Hypothetical protein.
       0.851
Phep_3351
Hypothetical protein.
       0.754
Phep_3237
ABC-2 type transporter.
  
 
 0.694
Phep_2874
ABC transporter permease protein.
  
 
 0.687
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.581
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.561
Phep_3355
PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain.
  
 
 0.534
Phep_3416
H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain.
   
   0.495
Phep_1598
PFAM: ABC transporter.
 
  
 0.428
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.