STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3572PFAM: Endoribonuclease L-PSP. (126 aa)    
Predicted Functional Partners:
Phep_3571
PFAM: Protein of unknown function (DUF1485); MlrC C-terminus.
 
     0.814
Phep_3574
Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase.
 
   
 0.812
Phep_3577
Glycosyl hydrolase BNR repeat-containing protein.
 
     0.800
Phep_3573
PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
       0.779
Phep_3576
PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
       0.774
Phep_3575
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
       0.773
Phep_3570
SMP-30/Gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
    0.744
Phep_3578
RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins.
       0.682
Phep_3569
Kelch repeat-containing protein; PFAM: Kelch motif.
       0.656
Phep_3568
PFAM: Aldo/keto reductase family.
  
    0.655
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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