STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3634RagB/SusD domain protein; PFAM: RagB, SusD and hypothetical proteins. (508 aa)    
Predicted Functional Partners:
Phep_3633
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.931
Phep_3636
PFAM: Uncharacterized protein conserved in bacteria (DUF2329).
 
     0.834
Phep_0787
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.828
Phep_0956
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.826
Phep_3635
Hypothetical protein.
       0.820
Phep_3632
PFAM: Y_Y_Y domain; Two component regulator propeller; Sigma-70, region 4.
 
     0.815
Phep_3637
PFAM: Uncharacterized protein conserved in bacteria (DUF2329).
 
     0.815
Phep_2844
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
 
   0.810
Phep_2829
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
 
   0.807
Phep_0343
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.782
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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