STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3682Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily. (255 aa)    
Predicted Functional Partners:
Phep_3684
PFAM: ABC transporter.
       0.661
Phep_3683
PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ.
  
    0.610
Phep_2034
Amino acid adenylation domain protein; PFAM: Aminotransferase class-III; AMP-binding enzyme; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; TIGRFAM: amino acid adenylation domain.
  
 
 0.582
Phep_2033
Amino acid adenylation domain protein; PFAM: Condensation domain; AMP-binding enzyme; Methyltransferase domain; TIGRFAM: amino acid adenylation domain.
  
 
 0.538
Phep_3685
PFAM: GH3 auxin-responsive promoter.
       0.495
Phep_2472
UBA/THIF-type NAD/FAD binding protein; PFAM: MoeZ/MoeB domain; ThiF family.
  
 
 0.482
Phep_3632
PFAM: Y_Y_Y domain; Two component regulator propeller; Sigma-70, region 4.
   
 
 0.434
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.429
Phep_0853
Hypothetical protein.
  
     0.424
Phep_0095
PFAM: Rhodanese-like domain.
  
 
 0.413
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.