STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3796Hypothetical protein. (409 aa)    
Predicted Functional Partners:
Phep_2588
Peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase family.
  
     0.614
Phep_3795
PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II.
       0.592
hepC
Heparinase II/III family protein; Specifically cleaves heparan sulfate-rich regions of acidic polysaccharides. Does not act on N,O-desulfated glucosamine or N- acetyl-O-sulfated glucosamine linkages. Functions in cleaving metazoan heparan sulfate and providing carbon, nitrogen and sulfate sources for microorganisms; Belongs to the polysaccharide lyase 12 family.
       0.543
Phep_0733
Hypothetical protein; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.542
Phep_3794
Hypothetical protein.
       0.519
Phep_3041
Hypothetical protein; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
 
    0.484
Phep_0554
Hypothetical protein.
  
     0.440
Phep_0226
Hypothetical protein; PFAM: TonB-dependent Receptor Plug Domain.
 
     0.421
Phep_0469
Hypothetical protein.
 
     0.420
Phep_1137
PFAM: Radical SAM superfamily.
       0.420
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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