STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phep_3895PFAM: ABC transporter. (418 aa)    
Predicted Functional Partners:
Phep_3894
PFAM: ABC-2 type transporter.
 
 0.998
Phep_2027
PFAM: ABC-2 type transporter.
 
 0.995
Phep_2026
PFAM: ABC transporter.
  
  
 
0.908
Phep_3897
PFAM: Polysaccharide deacetylase; Glycosyl transferase family 2.
 
  
 0.879
Phep_3893
PFAM: Glycosyl transferases group 1.
 
 
 0.863
Phep_3898
PFAM: Glycosyl transferase family 2.
 
  
 0.852
Phep_3903
Hypothetical protein.
 
 
 0.841
Phep_3890
Polysaccharide export system outer membrane protein; PFAM: SLBB domain.
  
  
 0.812
Phep_3900
PFAM: Acyltransferase family.
  
  
 0.808
Phep_3902
PFAM: Glycosyl transferases group 1.
  
 
 0.798
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.