STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_0061PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: sus:Acid_6668 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family. (901 aa)    
Predicted Functional Partners:
Cpin_0060
KEGG: bpy:Bphyt_0079 transcriptional regulator, AraC family.
       0.615
Cpin_0059
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor.
       0.595
Cpin_0062
Hypothetical protein.
       0.500
Cpin_0058
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: aba:Acid345_0545 sigma-24, ECF subfamily.
       0.448
Cpin_0056
PFAM: RagB/SusD domain protein; KEGG: mxa:MXAN_4747 putative lipoprotein.
    
  0.445
Cpin_6022
PFAM: glycoside hydrolase family 43; KEGG: mxa:MXAN_5247 glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.426
Cpin_2469
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: aba:Acid345_4484 glycoside hydrolase family 2, TIM barrel.
  
  
 
0.410
Cpin_2720
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: aba:Acid345_4484 glycoside hydrolase family 2, TIM barrel.
  
  
 
0.410
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.