STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_0993PFAM: protein of unknown function DUF892; KEGG: azc:AZC_2285 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Cpin_0992
KEGG: gdi:GDI0805 hypothetical protein.
       0.677
Cpin_5037
Catalase; PFAM: manganese containing catalase; KEGG: mfa:Mfla_1436 catalase.
    0.673
Cpin_0994
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1732 short-chain dehydrogenase family protein.
 
     0.665
Cpin_0995
KEGG: mfa:Mfla_0558 DNA topoisomerase, type I, putative.
 
     0.631
Cpin_0998
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: gbm:Gbem_0128 DNA ligase D.
 
     0.570
Cpin_6404
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; mRNA capping enzyme; DNA primase small subunit; KEGG: gbm:Gbem_0128 DNA ligase D.
 
     0.557
Cpin_3242
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; KEGG: DNA ligase D; K01971 DNA ligase (ATP).
 
     0.524
Cpin_0988
PFAM: protein of unknown function DUF1452; KEGG: reh:H16_B2344 hypothetical protein.
 
    0.491
Cpin_5210
Hypothetical protein; KEGG: sus:Acid_6666 outer membrane protein.
 
    0.464
Cpin_3098
KEGG: xcb:XC_1289 hypothetical protein.
  
  
 0.450
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.