STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_1007Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: hypothetical protein. (684 aa)    
Predicted Functional Partners:
Cpin_1006
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: eli:ELI_12660 two-component response regulator.
 
   0.941
Cpin_5950
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: ban:BA5691 response regulator LytR.
 
   0.810
Cpin_3628
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: hypothetical protein.
 
   0.805
Cpin_1177
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: hypothetical protein.
 
   0.803
Cpin_5734
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: eli:ELI_12660 two-component response regulator.
 
   0.803
Cpin_0307
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: sus:Acid_2309 response regulator receiver protein.
  
   0.801
Cpin_1844
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: hypothetical protein.
 
   0.800
Cpin_7298
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: hypothetical protein.
 
   0.800
Cpin_0671
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: cps:CPS_2278 LytTr DNA-binding response regulator.
 
   0.799
Cpin_5383
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: hypothetical protein.
 
   0.795
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.