STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_1271PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein. (737 aa)    
Predicted Functional Partners:
Cpin_1496
PFAM: FAD-binding 9 siderophore-interacting domain protein; KEGG: yen:YE2476 hypothetical protein.
   
   0.798
Cpin_1272
Hypothetical protein.
       0.773
Cpin_1269
Methyltransferase type 12; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.
  
    0.721
Cpin_1270
Hypothetical protein; KEGG: similar to chromosome 9 open reading frame 41.
       0.709
Cpin_3397
PFAM: Lanthionine synthetase C family protein; KEGG: hypothetical protein.
 
   
 0.694
Cpin_1439
PFAM: Lanthionine synthetase C family protein; KEGG: bha:BH0452 lantibiotic mersacidin modifying enzyme.
 
   
 0.663
Cpin_3392
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
 
   
 0.641
Cpin_1436
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
 
   
 0.556
Cpin_0558
PFAM: secretion protein HlyD family protein; KEGG: vsp:VS_II0849 multidrug resistance protein A.
  
 
 0.526
Cpin_0963
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3323 secretion protein HlyD.
  
 
 0.526
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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