STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_1484Hypothetical protein; KEGG: gsu:GSU3219 fibronectin type III domain- containing protein. (937 aa)    
Predicted Functional Partners:
Cpin_6262
Protease B; KEGG: mxa:MXAN_2791 protease B.
 
     0.765
Cpin_1313
Hypothetical protein; KEGG: mxa:MXAN_2791 protease B.
 
     0.762
Cpin_5674
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: mxa:MXAN_2791 protease B.
 
     0.744
Cpin_0174
Hypothetical protein.
  
     0.715
Cpin_3334
Hypothetical protein; KEGG: mxa:MXAN_2791 protease B.
  
     0.700
Cpin_2955
Hypothetical protein; KEGG: mxa:MXAN_2791 protease B.
  
     0.646
Cpin_7127
Hypothetical protein; KEGG: dac:Daci_5718 peptidase S1 and S6 chymotrypsin/Hap.
  
   
 0.622
Cpin_6184
Hypothetical protein; KEGG: mxa:MXAN_2791 protease B.
  
     0.596
Cpin_0551
PFAM: transglutaminase domain protein.
 
 
 
 0.520
Cpin_6944
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: tbd:Tbd_0909 putative TonB-dependent receptor.
  
    0.520
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.