STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_2016TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: zmo:ZMO0543 aconitate hydratase. (757 aa)    
Predicted Functional Partners:
Cpin_6916
Citrate (Si)-synthase; KEGG: GK16526 gene product from transcript GK16526- RA; TIGRFAM: citrate (Si)-synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 0.992
Cpin_6591
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bcy:Bcer98_3277 isocitrate dehydrogenase.
 
 0.987
Cpin_6592
KEGG: bba:Bd3723 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.982
Cpin_2074
PFAM: Aconitase B, N-terminal; aconitate hydratase domain protein; KEGG: sit:TM1040_1026 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase.
    
 0.929
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.875
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rru:Rru_A2467 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.874
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
 
 0.871
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 
 0.871
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.870
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: mxa:MXAN_5344 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.870
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.