STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_2119TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ent:Ent638_3442 TonB-dependent siderophore receptor. (810 aa)    
Predicted Functional Partners:
Cpin_5189
TIGRFAM: amino acid adenylation domain protein; non- ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: pfo:Pfl01_1845 peptide synthase.
   
  
 0.582
Cpin_1579
PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: pfl:PFL_0863 iron-uptake factor.
 
  
 0.576
Cpin_0020
Putative uncharacterized iron-regulated membrane protein; KEGG: mxa:MXAN_3914 PepSY-associated TM helix domain protein.
 
  
 0.547
Cpin_0213
PFAM: PepSY-associated TM helix domain protein; KEGG: abm:ABSDF0657 putative bifunctional protein [includes: sulfite reductase [NADPH] flavoprotein alpha- component; iron-uptake factor].
 
  
 0.534
Cpin_7063
KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein.
 
  
 0.521
Cpin_3072
Hypothetical protein; KEGG: ngk:NGK_1616 TonB.
 
 
 0.456
Cpin_2118
Hypothetical protein.
       0.433
Cpin_5372
Hypothetical protein; KEGG: pde:Pden_4731 methylamine utilisation MauE.
  
     0.426
Cpin_6669
Hypothetical protein.
  
     0.423
Cpin_4691
KEGG: sus:Acid_4522 DoxX family protein.
  
     0.414
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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