STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_2464PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3505 ABC transporter, permease protein. (792 aa)    
Predicted Functional Partners:
Cpin_0954
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sde:Sde_0328 ABC transporter permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.875
Cpin_0956
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein.
 
 
 0.861
Cpin_0961
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein.
 
 
 0.825
Cpin_0952
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sde:Sde_0326 response regulator receiver domain-containing protein.
 
     0.764
Cpin_4941
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_1129 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.579
Cpin_7080
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: swp:swp_2894 membrane-fusion protein, putative.
  
  0.574
Cpin_6888
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.566
Cpin_4940
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein.
 
 
 0.550
Cpin_2463
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sun:SUN_0333 short chain dehydrogenase.
       0.477
Cpin_0364
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dps:DP2123 multidrug ABC transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.458
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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