STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_2879PFAM: coagulation factor 5/8 type domain protein. (312 aa)    
Predicted Functional Partners:
Cpin_2880
Hypothetical protein.
       0.770
Cpin_2881
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
       0.751
Cpin_2878
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; thioredoxin domain protein; Redoxin domain protein; KEGG: hypothetical protein.
       0.709
Cpin_2877
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; thioredoxin domain protein; Redoxin domain protein; KEGG: hypothetical protein.
       0.703
Cpin_2882
PFAM: FecR protein; KEGG: cak:Caul_1968 anti-FecI sigma factor, FecR.
       0.454
Cpin_2876
Hypothetical protein.
       0.420
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.