STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_3205RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: aba:Acid345_0545 sigma-24, ECF subfamily. (178 aa)    
Predicted Functional Partners:
Cpin_3204
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor.
 
   0.747
Cpin_7236
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pat:Patl_1332 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.678
Cpin_3221
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sigK; sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.628
Cpin_2443
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bbt:BBta_3158 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.620
Cpin_7045
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mms:mma_2027 ECF subfamily RNA polymerase sigma factor.
  
     0.612
Cpin_4656
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bpd:BURPS668_A0089 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.611
Cpin_5523
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: rpt:Rpal_0706 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.587
Cpin_2095
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sus:Acid_0312 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.579
Cpin_3121
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; KEGG: psb:Psyr_4731 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.545
Cpin_5280
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ppf:Pput_3545 anti-FecI sigma factor, FecR; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.545
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.