STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_3281PFAM: NAD-dependent epimerase/dehydratase; KEGG: rde:RD1_1136 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Cpin_3282
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB1303 hypothetical protein.
 
     0.640
Cpin_1126
PFAM: iron-containing alcohol dehydrogenase; KEGG: iron-containing alcohol dehydrogenase.
  
  
 0.539
Cpin_2490
KEGG: rfr:Rfer_3496 hypothetical protein.
   
    0.533
Cpin_5016
KEGG: aci:ACIAD3581 hypothetical protein.
   
    0.533
Cpin_5547
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4108 3-demethylubiquinone-9 3- methyltransferase.
   
    0.451
Cpin_1506
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mxa:MXAN_0453 putative general stress protein 26.
  
    0.417
Cpin_6715
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: xcv:XCV1741 hypothetical protein.
  
    0.417
Cpin_0799
Hypothetical protein.
   
    0.414
Cpin_1931
PFAM: CsbD family protein; KEGG: par:Psyc_0156 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.414
Cpin_7047
PFAM: domain of unknown function DUF1731; dTDP-4- dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: pmr:PMI1781 cell division inhibitor, NAD(P)- binding.
   
    0.414
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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