STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_3514KEGG: bcu:BCAH820_1018 hypothetical protein. (562 aa)    
Predicted Functional Partners:
Cpin_3515
KEGG: abu:Abu_0109 hypothetical protein.
 
     0.948
Cpin_3513
PFAM: transposase IS3/IS911 family protein; KEGG: cja:CJA_0556 transposase.
       0.535
Cpin_4095
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 SWIM zinc finger domain- containing protein.
  
     0.470
Cpin_4096
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: hch:HCH_03958 retron-type reverse transcriptase.
 
     0.449
Cpin_4094
Hypothetical protein; KEGG: hch:HCH_03961 DNA binding domain-containing protein.
  
     0.407
Cpin_0076
PFAM: ADP-ribosylation/Crystallin J1; KEGG: hch:HCH_07000 ADP-ribosylglycohydrolase.
 
     0.400
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.