STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_3977anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: net:Neut_2091 putative FecR. (386 aa)    
Predicted Functional Partners:
Cpin_7045
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mms:mma_2027 ECF subfamily RNA polymerase sigma factor.
  
   0.779
Cpin_7228
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rpa:RPA3281 FecR, iron siderophore sensor protein.
  
     0.774
Cpin_4826
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor.
  
   0.769
Cpin_7236
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pat:Patl_1332 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.758
Cpin_6456
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_3080 FecR protein.
  
     0.744
Cpin_5280
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ppf:Pput_3545 anti-FecI sigma factor, FecR; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.742
Cpin_2855
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pag:PLES_16511 putative sigma-70 factor, ECF subfamily.
  
   0.737
Cpin_2883
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: rpt:Rpal_0706 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.711
Cpin_2673
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: ppu:PP_4608 ECF subfamily RNA polymerase sigma factor.
  
   0.676
Cpin_3121
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; KEGG: psb:Psyr_4731 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.671
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.