STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_4164Hypothetical protein; KEGG: rme:Rmet_1657 conserved hypothetical protein- transmembrane prediction. (552 aa)    
Predicted Functional Partners:
Cpin_4855
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sde:Sde_1703 hypothetical protein.
 
 0.665
Cpin_0333
KEGG: hypothetical protein.
  
     0.607
Cpin_1797
PFAM: Terpene synthase metal-binding domain protein; KEGG: scl:sce6369 putative pentalenene synthase.
  
     0.601
Cpin_7276
KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator.
  
     0.580
Cpin_4213
KEGG: bpa:BPP0493 hypothetical protein.
  
     0.522
Cpin_3949
PFAM: Terpene synthase metal-binding domain protein; KEGG: scl:sce8552 putative terpene cyclase.
  
     0.521
Cpin_1752
Hypothetical protein; KEGG: scl:sce5344 no similarity.
  
     0.509
Cpin_5961
PFAM: glycoside hydrolase family 76; KEGG: hypothetical protein.
  
     0.497
Cpin_2725
PFAM: glycoside hydrolase family 76; Ricin B lectin; KEGG: hypothetical protein.
  
     0.492
Cpin_4100
PFAM: Terpene synthase metal-binding domain protein; KEGG: scl:sce8552 putative terpene cyclase.
  
     0.484
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.