STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_4635PFAM: major facilitator superfamily MFS_1; KEGG: swd:Swoo_0364 major facilitator transporter. (426 aa)    
Predicted Functional Partners:
Cpin_5601
PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: swi:Swit_1629 stress responsive alpha-beta barrel domain-containing protein.
  
     0.645
Cpin_0827
PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: swi:Swit_1629 stress responsive alpha-beta barrel domain-containing protein.
  
     0.598
Cpin_6281
PFAM: protein of unknown function DUF1080; KEGG: swi:Swit_1630 hypothetical protein.
 
     0.534
Cpin_6459
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sde:Sde_1709 hypothetical protein.
 
   
 0.515
Cpin_1991
PFAM: protein of unknown function DUF718; KEGG: spe:Spro_0643 hypothetical protein.
  
  
 0.486
Cpin_4919
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.486
Cpin_2704
KEGG: swi:Swit_1900 quinoprotein glucose dehydrogenase; PFAM: cytochrome c class I; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
  
     0.484
Cpin_6727
PFAM: ASPIC/UnbV domain protein; KEGG: sus:Acid_1964 ASPIC/UnbV domain-containing protein.
  
     0.474
Cpin_1301
KEGG: bba:Bd1375 hypothetical protein.
  
     0.438
Cpin_6081
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ccs:CCNA_01283 NAD-dependent oxidoreductase.
 
    0.438
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.