STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_5008PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase SDR; K07124. (298 aa)    
Predicted Functional Partners:
Cpin_3410
Erythronolide synthase, Aspartate racemase; PFAM: condensation domain protein; KR domain protein; Beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: bte:BTH_II1235 JamP.
  
 0.766
Cpin_5291
Erythronolide synthase, Mycocerosate synthase; PFAM: KR domain protein; Beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: gur:Gura_3097 beta-ketoacyl synthase.
  
 0.742
Cpin_5289
PFAM: KR domain protein; Beta-ketoacyl synthase; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: pfl:PFL_2994 nonribosomal peptide synthase.
  
 0.738
Cpin_5296
PFAM: Beta-ketoacyl synthase; Methyltransferase type 11; Methyltransferase type 12; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_3932 polyketide synthase.
  
 0.728
Cpin_5009
Hypothetical protein.
       0.718
Cpin_3418
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; aminotransferase class-III; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
 0.596
Cpin_1434
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: pag:PLES_28971 PvdD(3); Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.583
Cpin_3419
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: bcb:BCB4264_A2463 bacitracin synthetase 1.
  
 
 0.563
Cpin_5290
Erythronolide synthase, 6-methylsalicylic acid synthase; PFAM: Beta-ketoacyl synthase; Methyltransferase type 11; KR domain protein; Methyltransferase type 12; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: bsu:BSU17200 polyketide synthase.
  
 0.530
Cpin_5130
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_4477 short-chain dehydrogenase/reductase SDR.
  
 
  0.468
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.