STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_5110PFAM: Two component regulator three Y domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pat:Patl_1836 two component AraC family transcriptional regulator. (966 aa)    
Predicted Functional Partners:
Cpin_5111
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: lpc:LPC_1001 RNA polymerase sigma E factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.733
Cpin_6739
PFAM: RagB/SusD domain protein.
 
     0.672
Cpin_6740
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.603
Cpin_5389
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: sde:Sde_0667 response regulator receiver domain-containing protein.
 
 
0.541
Cpin_1062
KEGG: sus:Acid_1603 two component LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-3 domain protein; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR.
  
 
 0.539
Cpin_5109
PFAM: glycoside hydrolase family 16; KEGG: mxa:MXAN_6550 glycosyl hydrolase, family 15.
 
     0.535
Cpin_5112
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: cja:CJA_1861 probable transmembrane sensor.
       0.533
Cpin_0325
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_2046 GAF sensor hybrid histidine kinase.
  
 
 0.530
Cpin_6279
KEGG: msl:Msil_0406 hypothetical protein.
 
     0.509
Cpin_5549
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.486
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.