STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_5495SMART: PUR-alpha/beta/gamma DNA/RNA-binding. (141 aa)    
Predicted Functional Partners:
Cpin_6967
TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: GI18319 gene product from transcript GI18319- RA.
  
     0.753
Cpin_0535
Hypothetical protein; KEGG: nar:Saro_3059 trigger factor.
 
    0.751
Cpin_1014
KEGG: PHD Zn finger-containing protein.
  
     0.718
argS
arginyl-tRNA synthetase; KEGG: bba:Bd2027 hypothetical protein; TIGRFAM: arginyl-tRNA synthetase.
  
     0.656
Cpin_5948
PFAM: acyl-CoA reductase; KEGG: hypothetical protein.
  
     0.650
Cpin_1161
Hypothetical protein.
  
     0.623
rpsU
TIGRFAM: ribosomal protein S21; KEGG: mxa:MXAN_5201 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.607
Cpin_0869
PFAM: GH3 auxin-responsive promoter; KEGG: afr:AFE_0805 auxin-responsive GH3-related protein.
  
     0.599
Cpin_1526
KEGG: bca:BCE_0838 hypothetical protein.
  
     0.587
Cpin_0434
Hypothetical protein.
  
     0.570
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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