STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_5506PFAM: lipolytic protein G-D-S-L family; glycoside hydrolase family 28; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family. (727 aa)    
Predicted Functional Partners:
Cpin_5505
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
   
 0.913
Cpin_1812
PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein.
  
 0.908
Cpin_5507
PFAM: RagB/SusD domain protein.
 
   0.872
Cpin_5511
PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.732
Cpin_5504
PFAM: mannitol dehydrogenase domain protein; Mannitol dehydrogenase rossman domain; KEGG: bsu:BSU12380 altronate oxidoreductase.
 
   
 0.731
Cpin_5508
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.704
Cpin_1577
KEGG: sus:Acid_0267 hypothetical protein.
 
   
 0.677
Cpin_1578
PFAM: glycosyl hydrolase family 88; KEGG: aba:Acid345_0962 glycosyl hydrolase, family 88.
 
   
 0.657
Cpin_4845
KEGG: pzu:PHZ_c2479 hypothetical protein.
 
   0.654
Cpin_5503
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1735 altronate dehydratase.
 
   
 0.623
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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