Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LicAProtein licA; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)    
Predicted Functional Partners:
LicC
CTP--phosphocholine cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.997
LicB
Protein licB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
LicD
Phosphorylcholine transferase LicD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.954
IlvE
Branched chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.561
ARB03593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
ARB03594.1
Phenylacetic acid degradation protein PaaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
lapB
Lipopolysaccharide assembly protein LapB; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.523
GloA
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
       0.477
Your Current Organism:
Neisseria lactamica
NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus
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